Monday, October 11, 2010

Smiles

The simplified molecular input line entry specification or SMILES is a specification for unambiguously describing the structure of chemical molecules using short ASCII strings. SMILES strings can be imported by most molecule editors for conversion back into two-dimensional drawings or three-dimensional models of the molecules.

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Application on some molecules:

MoleculeStructureSMILES Formula
DinitrogenN≡NN#N
Methyl isocyanate (MIC)CH3–N=C=OCN=C=O
Copper(II) sulfateCu2+ SO42-[Cu+2].[O-]S(=O)(=O)[O-]
Œnanthotoxin (C17H22O2)Molecular structure of œnanthotoxinCCC[C@@H](O)CC\C=C\C=C\C#CC#C\C=C\CO
Pyrethrin II (C22H28O5)Molecular structure of pyrethrin IICOC(=O)C(\C)=C\C1C(C)(C)[C@H]1C(=O)O[C@@H]2C(C)=C(C(=O)C2)CC=CC=C
Aflatoxin B1 (C17H12O6)Molecular structure of aflatoxin B1O1C=C[C@H]([C@H]1O2)c3c2cc(OC)c4c3OC(=O)C5=C4CCC(=O)5
Glucose (glucopyranose) (C6H12O6)Molecular structure of glucopyranoseOC[C@@H](O1)[C@@H](O)[C@H](O)[C@@H](O)[C@@H](O)1
Bergenin (cuscutin) (a resin) (C14H16O9)Molecular structure of cuscutine (bergenin)OC[C@@H](O1)[C@@H](O)[C@H](O)[C@@H]2[C@@H]1c3c(O)c(OC)c(O)cc3C(=O)O2
pheromone of the Californian scale insect(3Z,6R)-3-methyl-6-(prop-1-en-2-yl)deca-3,9-dien-1-yl acetateCC(=O)OCCC(/C)=C\C[C@H](C(C)=C)CCC=C
2S,5R-Chalcogran : a pheromone of the bark beetle Pityogenes chalcographus[1](2S,5R)-2-ethyl-1,6-dioxaspiro[4.4]nonaneCC[C@H](O1)CC[C@@]12CCCO2
VanillinMolecular structure of vanillinO=Cc1ccc(O)c(OC)c1
Melatonin (C13H16N2O2)Molecular structure of melatoninCC(=O)NCCC1=CNc2c1cc(OC)cc2
Flavopereirin (C17H15N2)Molecular structure of flavopereirinCCc(c1)ccc2[n+]1ccc3c2Nc4c3cccc4
Nicotine (C10H14N2)Molecular structure of nicotineCN1CCC[C@H]1c2cccnc2
Alpha-thujone (C10H16O)Molecular structure of thujoneCC(C)[C@@]12C[C@@H]1[C@@H](C)C(=O)C2
Thiamin (C12H17N4OS+)
(vitamine B1)
SMolecular structure of thiaminOCCc1c(C)[n+](=cs1)Cc2cnc(C)nc(N)2

Source: Wikipedia

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